[phenixbb] DEN refinement and reference model
lp212 at cam.ac.uk
Tue Jan 8 05:07:28 PST 2013
Ok, fixed -
Eugene Valkov suggested using phenix.pdbtools with flags:
set_seg_id_to_chain_id=True (Sets the segID field to the chain ID).
clear_seg_id=True (Erases the segID field.)
I tried the second flag on both working and reference models, and now phenix.den_refine is running.
On 8 Jan 2013, at 12:34, Luca Pellegrini wrote:
> Phenix.den_refine (1.8.1-1168) stops and complains that:
> "Sorry: Reference model contains SEGIDs that do not match the working model."
> I have four chains in both working and reference model, ordered in the same way (A to D). Chains A and C are the same molecule, and chains B and D are also the same. Can you please advice? Some of the chains in the reference model contain more residues, is this a problem?
> Thanks for your help.
> Luca Pellegrini
> Department of Biochemistry
> University of Cambridge
> 80 Tennis Court Road
> Cambridge CB2 1GA - UK
> Email: lp212 at cam.ac.uk
> Tel: 0044-1223-760469
> Fax: 0044-1223-766002
> Sanger building, room 3.59
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> phenixbb at phenix-online.org
Department of Biochemistry
University of Cambridge
80 Tennis Court Road
Cambridge CB2 1GA - UK
Email: lp212 at cam.ac.uk
Sanger building, room 3.59
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