[phenixbb] Coot not allowing real space refinement when connected to phenix

Zheng Zhou zhengzhouzz at gmail.com
Wed Dec 4 21:04:14 PST 2013

Hi, Jobi,

I think you may need to change the coot path for Phenix.

It can be done easily through the GUI, File, preferences, Coot Path:



On Thu, Dec 5, 2013 at 3:36 AM, Nathaniel Echols <nechols at lbl.gov> wrote:

> On Tue, Dec 3, 2013 at 10:54 PM, Jobichen Chacko <jobichenc at gmail.com>wrote:
>> I recently upgraded to latest version of coot (version0.7.2). When I
>> try to do the Real space refine zone option, coot is giving the
>> following complaint (Refinement setup failure. Failed to find
>> restraints for PROLYSILE).
>> But it works fine when I open coot separately from a terminal and read
>> the pdb and mtz file.
> Phenix will instruct Coot to load user-provided CIF files, but I didn't
> think we interfere with Coot's own restraints otherwise.  Can you please
> send me the console output of Coot a) when launched from Phenix b) when
> launched by itself?
> -Nat
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