[phenixbb] Coot not allowing real space refinement when connected to phenix

Nathaniel Echols nechols at lbl.gov
Wed Dec 4 11:36:17 PST 2013

On Tue, Dec 3, 2013 at 10:54 PM, Jobichen Chacko <jobichenc at gmail.com>wrote:

> I recently upgraded to latest version of coot (version0.7.2). When I
> try to do the Real space refine zone option, coot is giving the
> following complaint (Refinement setup failure. Failed to find
> restraints for PROLYSILE).
> But it works fine when I open coot separately from a terminal and read
> the pdb and mtz file.

Phenix will instruct Coot to load user-provided CIF files, but I didn't
think we interfere with Coot's own restraints otherwise.  Can you please
send me the console output of Coot a) when launched from Phenix b) when
launched by itself?

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