[phenixbb] Adding H atoms - AssertionError - "You may not use the PHENIX installation itself as an output directory" msg

Nathaniel Echols nechols at lbl.gov
Wed Sep 5 18:17:47 PDT 2012

On Wed, Sep 5, 2012 at 6:13 PM, Rafael Lemos Miguez Counago
<r.counago at uq.edu.au> wrote:
> I had the same issue when I moved from the point-and-click to the command
> line installer (dev-1145 I think).  I installed the command line installer
> in the Applications directory and when I ran phenix.refine from the gui I
> got the same error message.  I then re-installed it at root and it is
> working fine since. But you will need to sudo the installation.

Sorry, this was not at all the intended behavior. :(  I've disabled
this check in the next build pending further debugging; hopefully
there will be a new installer available tomorrow.


More information about the phenixbb mailing list