[phenixbb] phenix_automr error and autobuild question

Maike Bublitz mbu at mb.au.dk
Thu Mar 22 06:23:58 PDT 2012

Dear all,

I have two requests:

1) I have trouble getting a molecular replacement job to run (Phenix 
Version 1.7.3-928), where I want to keep one ensemble fixed in its known 
orientation, only looking for a second ensemble. I keep on getting the 
following error message, both from the GUI and from command line (using 
a 'mymr.eff' parameter file):

AutoMR Input failed
Python argument types in
     SOLU.addSOLU_6DIM_ENSE(InputMR_AUTO, str, list, bool, list, float, 
bool, bool, bool)
did not match C++ signature:
     addSOLU_6DIM_ENSE(phaser::SOLU {lvalue}, std::string, 
scitbx::vec3<double>, bool, scitbx::vec3<double>, double, bool, bool, 
bool, bool, scitbx::vec3<double>, double)
*************ERROR ENDING *******************

I can't figure out what I'm doing wrong. Any suggestions?

2) Which parameters would I need to specify to let phenix.autobuild 
build a model for one protein of a 2-component complex from scratch, 
while keeping the other component unchanged (and using it to calculate 
the phases)? Is that possible?

Thanks for help,
best regards,

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