[phenixbb] Error in phenix.autobuild

Terwilliger, Thomas C terwilliger at lanl.gov
Wed Jun 27 09:43:10 PDT 2012

Hi John,
I'm sorry, that error certainly needs fixing.  Presumably there is something slightly unusual in your data that triggered it...might it be possible to send me that data file off-list (terwilliger at lanl.gov) and I'll have a look?
All the best,
Tom T

From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Tanner, John J. [TannerJJ at missouri.edu]
Sent: Wednesday, June 27, 2012 10:25 AM
To: PHENIX user mailing list
Subject: [phenixbb] Error in phenix.autobuild

Can anyone shed light on the error below?  The situation is that I have a ~90% complete model from refinement (r_work = 0.2415, r_free = 0.3167), and I want phenix.autobuild to build the rest of the structure.

I issued this command:

phenix.autobuild data=../ccp4/DrPRODH3-6_1_scala2.6Ang.mtz model=Refine_9/DrPRODH_refine_9.pdb seq_file=../seq/DrPRODH-noMet1.fasta rebuild_in_place=False nproc=3

I got this error:

[tannerjj at europa AutoBuild_run_2_]$ tail -n20 AutoBuild_run_2_1.log

Output space group: P 1 21 1 (No. 4)
Columns of data in AutoBuild_run_2_/refinement_PHX.mtz:
H K L FreeR_flag F_DrPRODH3-6 SIGF_DrPRODH3-6
Unit cell: (46.806, 95.875, 70.504, 90, 107.733, 90)
Space group: P 1 21 1 (No. 4)
Using AutoBuild_run_2_/refinement_PHX.mtz for refinement

Correcting data file /titan/tanner/DrPRODH/ccp4/DrPRODH3-6_1_scala2.6Ang.mtz for anisotropy and writing to AutoBuild_run_2_/aniso_data_PHX.mtz

Getting overall aniso B from datafile...

*************ERROR ENDING *******************

AutoBuild Input failed
iotbx InternalError: /net/longnose/scratch2/phenix/phenix-1.7.3-928/cctbx_project/iotbx/mtz/dataset.cpp(97): IOTBX_ASSERT(strlen(label) < sizeof(column_ptr->label)) failure.
*************ERROR ENDING *******************

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