[phenixbb] Did I work on this part of electronic density correctly

Pavel Afonine pafonine at lbl.gov
Sun Jan 1 17:56:48 PST 2012

Hi Dialing,

ideas to explore:
- what's the blue density? Is it 2mFo-DFc "missing-Fo-filled" map or 
not? compare both.
- sequence register error?
- what's the level of residual map you show and what's the solvent 
content (may be you need to contour at higher levels?)? If solvent 
content is high you may need to contour residual map at higher than 
traditional 3sigma.


On 1/1/12 5:11 PM, Dialing Pretty wrote:
> Dear All,
> Attached is a part of electronic density pap I assigned to Pro. After 
> Phenix refinement, we can see under the Pro ring there is a rather 
> large green, above the Pro ring there is a part of red.
> Do you think whether I assign the Pro correctly?
> I am looking forward to getting your reply.
> Cheers,
> Dialing
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> phenixbb at phenix-online.org
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