[phenixbb] FOM in output MTZ file from phenix.refine

Pavel Afonine pafonine at lbl.gov
Thu Sep 8 07:02:16 PDT 2011

Hi Joern,

> there is no FOM comlumn in my output MTZ file from phenix.refine.

yes, see page 57 here:

> According to the documentation, the MTZ with FOM should be written out by
> default. 

Which documentation you are referring to?

> I did not find any option that would trigger FOM inclusion.
> What can I do to include FOM?

A couple of options:
- use "export_final_f_model=mtz", for example:
phenix.refine data.hkl model.pdb export_final_f_model=mtz

- use phenix.reciprocal_space_arrays program:


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