[phenixbb] Errors in latest build dev-790

Nathaniel Echols nechols at lbl.gov
Sun Jun 19 18:29:22 PDT 2011

On Sun, Jun 19, 2011 at 5:53 PM, Yuri <yuri.pompeu at ufl.edu> wrote:

> Dear phenixers,
> I ran into some errors after my last upgrade.
> First, I noticed that all of the data plots are gone in the GUI, instead I
> get a message that says :plotting disabled due to missing library.
> Second I was running phenix.refine and got the following message, they may
> be related I am not positive:
> AttributeError : 'RefinementStatsPlot' object has no attribute 'null_fmt'

They are related - if the plotting library cannot load, the display of
statistics vs. cycle is replaced by a blank panel.  This was supposed to
allow the rest of the GUI to continue working, but I left out a couple of
crucial details.  The next build will have the bug fix.  However, I'm pretty
sure the GUI gives you very clear directions about how to fix the missing
library problem: you need to install a package called "lapack" (sometimes
called "lapack3").  I'm not sure what the command to do this would be on
RedHat, but it's very standard - in fact, it's almost always present in most
installations, which is why we don't distribute it ourselves.  (It shouldn't
even be required, but the library that uses it seems to automatically detect
it on the build machines, and I haven't figured out how to disable this.)
 Once this is installed, the plots should work as expected.


(PS. If you have submitted bug reports via the GUI you do not need to send
any further emails - they all end up in my inbox anyway.)
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