[phenixbb] phenix.phaser PATH problem

G P gysubscribe at gmail.com
Thu Jul 21 02:20:46 PDT 2011

Hi Ralf,

Thanks a lot for your help. I changed the order and it works now. But I am
wondering why? Is that means the .bashrc script will read lines from down to
up which allow it to see the line of source for phenix first?

Thanks a lot again!


On Wed, Jul 20, 2011 at 10:35 PM, Ralf Grosse-Kunstleve <
rwgrosse-kunstleve at lbl.gov> wrote:

> Hopefully, all you need to do is source phenix_env last.
> E.g. look in your .cshrc or .bashrc file with the phenix and ccp4 source
> commands.
> Reorder the commands so that phenix comes after the ccp4 command.
> Then open a new shell and run "phenix.phaser params.eff" again.
> Could you try that?
> (I recommend against copying files from the phenix to the ccp4 tree.)
> Ralf
> On Wed, Jul 20, 2011 at 11:21 AM, G P <gysubscribe at gmail.com> wrote:
>> Dear all,
>> It's long story:
>> At beginning, I have phenix installed. I do not have CCP4 installed. Then
>> I run "phenix.phaser params.eff" to call phenix run phaser from script
>> params.eff. It works well.
>> Then, I installed CCP4 with its own phaser inside. Then I run again
>> "phenix.phaser params.eff". The computer start to import files (should be
>> some libraries and supporting files, not input data) from CCP4 installation
>> directory. It seems so strange for me.
>> And because some of the .so files in CCP4 directory are for 32bit,
>> phenix.phaser gave me error message: wrong ELF class: ELFCLASS32 and refused
>> to keep running. I guess I could solve this problem by copying the same .so
>> file in phenix directory into CCP4's directory.
>> What I really want to know is why this happen. Is that the installation of
>> CCP4 changed some kinds of PATH variables for phenix? How could I fix by
>> giving a right path again?
>> I would appreciate to any help. Thanks a lot guys!
>> Best regards,
>> GP
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