[phenixbb] partial model in autobuild?

Thomas C. Terwilliger terwilliger at lanl.gov
Wed Dec 21 08:24:33 PST 2011

Hi Yarrow,

Yes, you can run autobuild with your data, sequence file, and partial
model, and specify "rebuild_in_place=False".  Then autobuild with start
with your model and try to rebuild the existing part and build the missing
part. However if the fourth model is "not well defined", building the
missing part may not be that successful.

All the best,
Tom T

>> Hello,
>> I would like to use autobuild to start from a partial model.  I have done
>> Phaser EP with phases from MR.  I can see the fourth molecule but it is
>> not well defined and I am not exactly sure where to place it. Is it
>> possible to run autobuild from the partial model to fill in the fourth
>> model?  Thanks.
>> -Yarrow
>> --
>> Yarrow Madrona
>> Graduate Student
>> Molecular Biology and Biochemistry Dept.
>> University of California, Irvine
>> Natural Sciences I, Rm 2403
>> Irvine, CA 92697
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/phenixbb

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