[phenixbb] map output from ncs_average

Ursula Schulze-Gahmen uschulze-gahmen at lbl.gov
Fri Dec 9 10:40:42 PST 2011

Yes, I used the same command. By the way, I can open the map file in Coot.
I am thinking of updating my version of Pymol since I am using a relatively
old version.
Any other suggestion?


On Fri, Dec 9, 2011 at 10:32 AM, Nathaniel Echols <nechols at lbl.gov> wrote:

> On Fri, Dec 9, 2011 at 10:28 AM, Ursula Schulze-Gahmen
> <uschulze-gahmen at lbl.gov> wrote:
> > I used ncs_average to create an averaged fo-fc map. From the manual I
> > thought that the output map is a CCP4 map. I have however difficulties to
> > read it into Pymol as ccp4 map. It is not recognized. Any suggestions?
> What command did you use to load it in PyMOL?  You might need to do
> this to get it to recognize the file type:
> load ncs_average.map, format=ccp4
> (PyMOL expects .ccp4 as the extension here - .map is assumed to be an
> XPLOR map.  Most of the programs in PHENIX will use .ccp4 as the
> extension, but there are probably inconsistencies.)
> -Nat
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Ursula Schulze-Gahmen, Ph.D.
Assistant Researcher
UC Berkeley, QB3
356 Stanley Hall #3220
Berkeley, CA 94720-3220
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