[phenixbb] Writing PDB

Jeff Headd jjheadd at lbl.gov
Sat Dec 3 14:47:17 PST 2011

Hi Bradley,

You can use phenix.pdbtools to select a specified chain. The syntax is
like this:

phenix.pdbtools keep="chain A" model.pdb

This will write out a new PDB file which only contains chain A.


On Sat, Dec 3, 2011 at 2:11 PM, Bradley Hintze <bradley.hintze at duke.edu> wrote:
> Hi again,
> I am trying to  take a pdb and write out a new pdb with just a specified
> chain. I am trying to do this with the hierarchy but am unfamiliar with its
> functions How do I do this?
> Thanks,
> Bradley
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