[phenixbb] PDB Tools and CNS formatted structure factors

Schubert, Carsten [PRDUS] CSCHUBER at its.jnj.com
Wed Sep 22 04:54:08 PDT 2010

Hi Joe,


I usually use coot  when I renumber sequences or reassign chain IDs.








From: phenixbb-bounces at phenix-online.org
[mailto:phenixbb-bounces at phenix-online.org] On Behalf Of Joseph Noel
Sent: Wednesday, September 22, 2010 6:39 AM
To: phenixbb at phenix-online.org
Subject: [phenixbb] PDB Tools and CNS formatted structure factors


Is there anyway with the PDB Tools to renumber protein chains? I have a
model that doesn't correspond to the actual sequence, off by a couple of
residues and just looking for a quick way to change that. Also, which
module in Phenix is used to read in and convert CNS formatted ascii
structure factors to the mtz read by phenix other then using ccp4.


Joseph P. Noel, Ph.D.
Investigator, Howard Hughes Medical Institute
Professor, The Jack H. Skirball Center for Chemical Biology and
The Salk Institute for Biological Studies
10010 North Torrey Pines Road
La Jolla, CA  92037 USA

Phone: (858) 453-4100 extension 1442
Cell: (858) 349-4700
Fax: (858) 597-0855
E-mail: noel at salk.edu

Web Site (Salk): http://www.salk.edu/faculty/faculty_details.php?id=37
Web Site (HHMI): http://hhmi.org/research/investigators/noel.html


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