[phenixbb] Autobuild error - bash/dash/sh

Stephen Graham scg34 at cam.ac.uk
Tue Oct 26 08:32:58 PDT 2010

Hi Nat,

By 'crash', I mean the GUI just hangs and no longer refreshes.

But...I just tested with a sequence file with no headers (named
protein.seq) and this worked fine.  If I try and load the PIR
formatted sequence I get a sensible error message.  But if I try and
load a FASTA formatted sequence file (called sequence.fasta) the GUI
becomes unresponsive.

Will send files offline,


On 26 October 2010 16:03, Nathaniel Echols <nechols at lbl.gov> wrote:
> On Tue, Oct 26, 2010 at 3:15 AM, Stephen Graham <scg34 at cam.ac.uk> wrote:
>> P.S.  The reason I'm trying to run autobuild from the command line
>> rather from the GUI is that the GUI seems to crash every time I give
>> autobuild a sequence file in either the FASTA or PIR format.  Is there
>> another format I should be using?
> As Tom says, a plain sequence and nothing else will work - but I use
> FASTA and PIR for testing, and they should be okay.  Could you please
> send me a sequence file that has this problem?  (And by "crash", do
> you mean "completely quits", or "raises an error message"?)
> thanks,
> Nat
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Dr Stephen Graham
1851 Research Fellow
Cambridge Institute for Medical Research
Wellcome Trust/MRC Building
Addenbrooke's Hospital, Hills Road
Cambridge, CB2 0XY, UK
Phone: +44 1223 762 638

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