[phenixbb] Help with custom bond restraints syntax

Jobichen Chacko jobichenc at gmail.com
Wed Oct 20 22:49:38 PDT 2010

 Dear All,
I am trying to make a custom covalent  bond with an inhibitor compound and
my protein. Plesae see the attached file for restraints file. But phenix is
returning this error. Please help.
Sorry: No atom selected: 'chain S and resid 501 and name C7

I am using version1.6-289

refinement.geometry_restraints.edits {

  bond {

       action = *add

       atom_selection_1 = chain S and resid 501 and name C7

       atom_selection_2 = chain A and resid 25 and name SG

       distance_ideal = 2.35

       sigma = 0.1

       slack = None


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