[phenixbb] refine : annealing and bulk solvent

Lepore, Bryan Bryan.Lepore at umassmed.edu
Mon Oct 11 10:16:57 PDT 2010

[ phenix 1.6.4-486 ] 

from the program output, it appears that prior to annealing ( e.g. torsion ), a bulk solvent grid search is run using the initial model. after that ends, all the annealing steps are carried out on the model using the initially optimized bulk solvent. When annealing is done, another search is conducted on the final model.

i.e. there are no bulk solvent changes during annealing.

is this right?


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