[phenixbb] phenix.refine : mask

Lepore, Bryan Bryan.Lepore at umassmed.edu
Wed Oct 6 13:43:36 PDT 2010

i gather that the only way to define an "a priori" mask of the molecular envelope in phenix.refine is to generate Fmask and combine those in refinement - is that right?

i.e. there isn't a more intuitive way using a mama mask or somesuch to keep the bulk solvent from flattening out parts you think are model, besides the model that is being refined in the first place?


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