[phenixbb] refine .log : loggraph flags

Nathaniel Echols nechols at lbl.gov
Wed Oct 6 10:19:40 PDT 2010

On Wed, Oct 6, 2010 at 9:35 AM, Lepore, Bryan <Bryan.Lepore at umassmed.edu> wrote:
> a related thread : its nice how xtriage puts loggraph specifications ($TABLE etc.) in the output. what is the source file that writes this? or is it more complicated than that? the .log can be hacked, but its a miserable thing to do.
> e.g. to incorporate such lines into phenix refine output - esp. a ln(sigma-A) plot - would be handy in such a format. then the course of refinement or all the dmin-dependent stats can be graphed.
> OR am i just missing something (CL flag, GUI...)

The GUI already does this:


Doesn't have sigma-A in there yet, but if Pavel adds this to the
mmtbx.f_model.info class, I'll add that to the GUI too.  We try to
avoid logfile parsing as much as possible, although the GUI can handle
loggraph format if necessary (i.e. Phaser).


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