[phenixbb] Cadmium missing atoms

Kristin Sutton ksutton at hwi.buffalo.edu
Wed Mar 31 11:04:27 PDT 2010


I am refining a structure with 2 cadmium ions present.  From the extensions
menu in coot, I clicked on modeling >> residues with missing atoms, and both
Cadmium ions came up in that list.  The density surrounding these atoms is
also strange,  positive density right in the middle of the atom, negative
density surrounding the whole atom.  How do I make sure these are being
refined correctly?

Thank you in advance,

Kristin A. Sutton
Graduate Student
University of Buffalo
Department of Structural Biology
Hauptman-Woodward Medical Research Institute
700 Ellicott Street
Buffalo, NY 14203
P: (716)898-8683
F: (716)898-8600
E: ksutton at hwi.buffalo.edu

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