[phenixbb] molprobity todo list and coot integration in linux

hari jayaram harijay at gmail.com
Tue Mar 9 08:38:20 PST 2010

Thanks Nat,
I didnt realize that the phenix tables also recenter coot when you click on
any item in the validate list..So since this feature works perfectly well I
dont see any need to have a separate popup GUI todo list.

Just curious , speaking of coot and phenix communicating , Is it true that
coot and phenix communicate by XML-RPC ? ..


On Tue, Mar 9, 2010 at 10:43 AM, Nathaniel Echols <NEchols at lbl.gov> wrote:

> On Mar 9, 2010, at 10:34 AM, hari jayaram wrote:
> > Hi,
> > Is a difference in the way the GUI molprobity TODO list is displayed
> between linux and Mac OSX . I am running 1.6.289 on both ...and have coot
> with scheme and python scripting installed,
> >
> > On mac OSX , phenix starts up coot with the molecule and maps loaded
> after a phenix.validate and a TO-DO list in a separate GUI window
> >
> > In Linux these separate To-do list windows dont seem to open . ..I have
> looked everywhere and the dont seem burried behind something else,
> >
> > Is there some setting I need to toggle to have these popup , sortable
> todo lists for molprobity assisted rebuilding on Linux systems?
> Preferences::Graphics::Show validation results in Coot GUI
> FYI, I mostly stopped working on this after I figured out how to recenter
> Coot from PHENIX, so it only includes the results from the "Model
> validation" tab - however, I'm happy to extend this to include the geometry
> and real-space CC analyses if people would find this useful.
> --------------------
> Nathaniel Echols
> Lawrence Berkeley Lab
> 510-486-5136
> NEchols at lbl.gov
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb
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