[phenixbb] phenix.reduce segmentation fault with -trim option on Snow leopard Mac OSX

Nathaniel Echols NEchols at lbl.gov
Thu Mar 4 20:39:39 PST 2010

On Mar 4, 2010, at 8:13 PM, hari jayaram wrote:
> Hi 
> I am running the phenix.reduce with the -trim option and getting a segmentation fault with phenix version 1.6.289 
> I will remove the molprobity introduced hydrogens using pdbtools ..but thought I will write in with this 

Thanks for the heads-up - would it be possible to send us the PDB file for debugging?  Without reproducing the problem it's difficult to guess what is breaking.  I've seen this happen once before, and it turned out to be caused by an unusual (but legitimate) combination of records in a file that confused the PDB reader used by Reduce (but weirdly, also only crashed on Snow Leopard).


Nathaniel Echols
Lawrence Berkeley Lab
NEchols at lbl.gov

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