[phenixbb] phaser spacegroup within phenix

Nathaniel Echols nechols at lbl.gov
Wed Jun 16 07:29:51 PDT 2010

On Wed, Jun 16, 2010 at 5:01 AM, Francis E Reyes <Francis.Reyes at colorado.edu
> wrote:

> use_all_plausible_sg = False is the default in the command line version of
> phenix automr... was it enabled by default for the gui?

For AutoMR, no (the GUI rarely modifies the default behavior of programs).
 After looking at the AutoMr code, I'm still not exactly sure what this
option does, but I assume it's equivalent to either searching "all" or
"hand" (which I think means the space group and its enantiomorph).

For Phaser, the default is now "hand", for both the command-line version and
the GUI.  CCP4 is using an older version of Phaser, which I believe only
used the assigned space group and didn't try anything else.

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