[phenixbb] writing composite omit maps in .xplor

Nathaniel Echols nechols at lbl.gov
Tue Jun 1 11:45:50 PDT 2010

On Sat, May 29, 2010 at 2:27 PM, Susan Tsutakawa <setsutakawa at lbl.gov>wrote:

> Continuing the conversation on looking at Phenix maps in pymol, what is the
> best way to generate .xplor maps in Autobuild.  I would like to generate a
> figure in pymol with an omit map.   I wasn't able to find documentation
> explicitly stating how this can be done.

Okay, starting tomorrow (or whenever the next installer is ready):

phenix.mtz2map resolve_composite_map.mtz

You can specify a PDB file if you want it to create the map around your
molecule (or a selection thereof) instead of the unit cell.  It is tailored
for RESOLVE and phenix.refine map coefficients, which have fairly
well-defined column labels; others should work too, but it may be clumsier.

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