[phenixbb] what should I do after making an iterative-build omit map

J J phenix.upitt at gmail.com
Fri Jul 30 09:05:57 PDT 2010

Hello everyone,

I used default setting in phenix and made an iterative-build omit map (it
took 3 days!!!).
Input: a pdb file (6 identical chains in AU); an mtz file
output:  a resolve_composite_map.mtz; an overall_best_edited.pdb


1) There is only one chain in overall_best_edited.pdb,
the resolve_composite_map.mtz clearly indicates there are 6 chains in AU.

2) What's the next step for me after obtaining resolve_composite_map.mtz?
        a) use phenix.refine to do refinement? if this is the case, what
files should I use?
        b) use phenix.assign_sequence to  assign sequence
to resolve_composite_map.mtz?
        c) something else?

Thanks in advance.


U Pitt
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