[phenixbb] Questions about sequence file vs pdb model file in Autobuild

J J phenix.upitt at gmail.com
Thu Jul 22 07:06:19 PDT 2010

The same problem shows up when I use the new function phenix.phase_and_build
(version 1.6.3).

On Thu, Jul 22, 2010 at 10:01 AM, J J <phenix.upitt at gmail.com> wrote:

> Dear All,
> Facts:
> -input: a sequence file, a pdb model file, an mtz file; the sequence file is
> the same as the pdb model except that the sequence file has 6 more residues
> at N-terminal; the pdb model is almost the same as my protein structure.
> (In a word, I just want to add a few more residues to the current pdb model. Of course I can do it in coot by manually placing residues at the N-terminal, but why not autobuild?)
> -problem: the output chain sequence is not the same as the sequence file
> (not the same as the input model file either). It misses some residues at
> the N-terminal and it adds some residues at the C-terminal (but disconnected
> from the C-terminal). Is it normal in autobuild? How to correct it?
> Thanks.
> Jason
> U Pitt
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