[phenixbb] questions about ncs copy in autobuild

J J phenix.upitt at gmail.com
Thu Jul 22 06:26:50 PDT 2010

Hi Tom,

The ncs copy problem is fixed by setting rebuild_in_place=False. The outcome
does have 6 chains in the au.

-input: a sequence file, a pdb model file, an mtz file; the sequence file is
the same as the pdb model except that the sequence file has 6 more residues
at N-terminal; the pdb model is almost the same as my protein structure.

-problem: the output chain sequence is not the same as the sequence file
(not the same as the input model file either). It misses some residues at
the N-terminal and it adds some residues at the C-terminal (but disconnected
from the C-terminal). Is it normal in autobuild? How to correct it?



U Pitt
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