[phenixbb] How to define multiple rebuilding region?

Tom Terwilliger terwilliger at lanl.gov
Thu Jul 15 09:04:26 PDT 2010

Thanks, Nat!

Just to be clear: the format for lists on the command line for  
autobuild is different than for a parameters file.  In a parameters  
file, you leave off the quotes for the list; on the command line you  
use quotes around the entire list.

All the best,
Tom T

On Jul 14, 2010, at 4:40 PM, Nathaniel Echols wrote:

> On Wed, Jul 14, 2010 at 3:04 PM, J J <phenix.upitt at gmail.com> wrote:
> Tom,
> I have tried what you suggested.
> rebuild_chain_list= "A B"
> rebuild_res_end_list= "50 50"
> rebuild_res_start_list="10 10"
> Both do not work.
> Try leaving the quotes out or enclosing only the individual chain  
> IDs or residue numbers in quotes - these parameters are all supposed  
> to be lists of values, and the parser groups anything in quotes as a  
> single list item.
> -Nat
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
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