[phenixbb] Interpreting new ligands

Monique Gangloff mg308 at cam.ac.uk
Mon Jul 12 09:33:18 PDT 2010


I have not managed to refine glycans such as beta-L-fucose (FUL) that are not listed in the PHENIX library. I am not sure what the problem is. 

eLBOW works fine and creates a cif file for FUL.

elbow.ligand_linking file.pdb crashes with the following error message: "Fatal problems interpreting PDB file".

The refinement works fine when I remove FUL from my pdb file.

Any suggestion would be very welcome.


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