[phenixbb] Masking a ligand

Pavel Afonine PAfonine at lbl.gov
Thu Jul 8 12:35:28 PDT 2010

Hi Esmael,

remove the ligand from PDB file or set occupancy of the ligand to zero 
and use phenix.maps to compute any number of desired maps.

To use phenix.maps:

- from the command line type phenix.maps and hit Enter, then follow the 
instructions on the screen;
- from PHENIX GUI use Maps -> Create Maps.


On 7/8/10 12:25 PM, esmael wrote:
> Hi,
> I am working with a protein that has many ligands; I need a density map in the "MTZ" format without ligands.  Is there a way to do this?
> Thanks a lot,
> Esmael
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