[phenixbb] refinement of N-glycosylation

Georg Mlynek georg.mlynek at univie.ac.at
Thu Feb 25 13:48:22 PST 2010

Hi, are these the files with .eff extension?

Kind regards Georg.

-----Ursprüngliche Nachricht-----
Von: phenixbb-bounces at phenix-online.org
[mailto:phenixbb-bounces at phenix-online.org] Im Auftrag von Nathaniel Echols
Gesendet: Donnerstag, 25. Februar 2010 22:46
An: PHENIX user mailing list
Betreff: Re: [phenixbb] refinement of N-glycosylation

On Feb 25, 2010, at 1:35 PM, Georg Mlynek wrote:
> 2)      From the command line everything is perfect now, but as I also
want to know how to do this with the gui (version 1.6-289), I added the
files BMA.cif file and the apply_cif_link.params together with my
coordinates and the mtz in the Input files. But I get following error
> <image001.png>
> Is this a Bug?

Probably.  Could you please send me (not the list) the final configuration
files created by phenix.refine from both the command-line and the GUI?


Nathaniel Echols
Lawrence Berkeley Lab
NEchols at lbl.gov

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