[phenixbb] Omit map Problem

Carruthers, Carl W. CWCarruthers at tmhs.org
Tue Feb 9 15:26:37 PST 2010

When making an composite omit map in Phenix 1.6 GUI, the final "resolve_composite_map.mtz" file won't load in coot or pymol.  When I click the little magnifying glass on the Summary page, Phenix states that it can't find the file, even though I can see it when using Finder (Mac OS).

The final lines of the run status are below:

Putting all omit results in  AutoBuild_run_61_/OMIT
OMIT results in  AutoBuild_run_61_/OMIT :
['overall_best.pdb_OMIT_REGION_1', 'overall_best.pdb_OMIT_REGION_10', 'overall_best.pdb_OMIT_REGION_11', 'overall_best.pdb_OMIT_REGION_12', 'overall_best.pdb_OMIT_REGION_2', 'overall_best.pdb_OMIT_REGION_3', 'overall_best.pdb_OMIT_REGION_4', 'overall_best.pdb_OMIT_REGION_5', 'overall_best.pdb_OMIT_REGION_6', 'overall_best.pdb_OMIT_REGION_7', 'overall_best.pdb_OMIT_REGION_8', 'overall_best.pdb_OMIT_REGION_9', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_1', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_10', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_11', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_12', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_2', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_3', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_4', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_5', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_6', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_7', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_8', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_9', 'resolve_composite_map.mtz']

Combining all 12 omit regions in AutoBuild_run_61_/OMIT
No background map in composite map
Composite omit result is in  /Users/carlcarruthers/Crystallography/AutoBuild_run_61_/OMIT/resolve_composite_map.mtz
Possible operation: finished
Required antecedents: []
Expected results: []
Application method: finished
Yes, have antecedents...
Resulting expectation:10000.0
Am I doing something wrong?  Is it a bug?  Thanks for helping a crystallogaophy newb (this is my first model!)...

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