[phenixbb] anomalous difference map demonstration in pymol

Pavel Afonine PAfonine at lbl.gov
Tue Sep 29 15:59:35 PDT 2009


start new PHENIX GUI by typing from the command line:


Then click on "Create maps" - that will allow you to compute and output 
anomalous difference maps in X-plor format.

You need to use the latest version for this:



On 9/29/09 3:48 PM, crystallogrphy wrote:
> Hi,
> I have used anomalous data to do refinement. The crystal diffracts to 
> 3.5A. The resulting mtz file shows good anomalous density around the 
> heavy atoms. Now I want to demonstrate the density in Pymol.
> Does anyone know how to generate the map use the map file in MTZ 
> format in Pymol?
> Thanks!
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