[phenixbb] low resolution map

Nathaniel Echols NEchols at lbl.gov
Tue Sep 8 17:17:33 PDT 2009

On Sep 8, 2009, at 7:58 AM, Tom Terwilliger wrote:
> You should probably add a step to keep and extend your freeR flags:
> iotbx.r_free_flags_completion_simple exptl_fobs_freeR_flags.mtz  2.8
> where exptl_fobs_freeR_flags.mtz is your refinement data file from
> your previous runs of autobuild (which contains your current set of
> freeR flags). This will produce a file with JUST the extended freeR
> flags. You can then combine this extended set of freeR flags with your
> hires file most easily with the reflection tools in the current PHENIX
> GUI.  Then use that hires_file in autobuild.

I didn't know about this command until today - but it is now  
incorporated into the GUI reflection tools  
(phenix.reflection_file_editor), so you can do this all in one step  
starting with the next installer (1.4-160 and up).


Nathaniel Echols
Lawrence Berkeley Lab
NEchols at lbl.gov

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