[phenixbb] Converting .mtz to xplor or having phenix output to xplor file

Pavel Afonine PAfonine at lbl.gov
Tue Oct 27 19:25:29 PDT 2009

Hi Sam,

two ways:

- ask phenix.refine to output X-plor formatted map. For example, to run 
phenix.refine just to compute the map:

phenix.refine model.pdb data.mtz main.number_of_mac=1 strategy=none 

- use "Create maps" option from main PHENIX GUI that will alow you to 
compute any map.


On 10/27/09 2:28 PM, Sam Stampfer wrote:
> Hi,
> This isn't exactly phenix-related but someone might know an easy 
> solution.  I'm trying to open an electron density map in pymol.  It 
> won't open .mtz files and the .xplor files I generated from ccp4i 
> don't seem to work either.  I need to have my density as a .xplor file 
> in order for pymol to open it (I think).  How would I generate a 
> .xplor file from .mtz?  Or, alternately, how can I set phenix to 
> output a .xplor file?  I've had it output to a cns file instead of 
> .mtz but that didn't help me get it in .xplor format.
> Thanks!
> -Sam
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