[phenixbb] Molprobity percentile statistic

Pavel Afonine PAfonine at lbl.gov
Mon Oct 19 16:48:44 PDT 2009

Hi Hari,

if you run phenix.model_vs_data you will get those numbers (namely: 
Ramachandran outliers, clashscores, CB-deviations; although you will not 
get "Molprobity score" simply because I don't know what it is and so I 
didn't add it):

phenix.model_vs_data model.pdb data.mtz

Nat: every time time you run model_vs_data for whatever purpose (getting 
fmodel, etc...) you get an object that contains all these numbers.


On 10/19/09 3:32 PM, hari jayaram wrote:
> Hi i just started using the phenix GUI front-end to Molprobity . Its
> really nice the way it plugs into coot and displays all the statistics
> etc.
> Is there any place that it also reports the percentile clashscore and
> percentile Molprobity score for overall model quality  a la the
> webserver at molprobity.biochem.duke.edu
> Thanks
> Hari
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