[phenixbb] autobuild

Thomas C. Terwilliger terwilliger at lanl.gov
Fri Oct 16 06:15:29 PDT 2009

Hi Colin,
I haven't tried it, but yes, you should be able to do this

If you specify


then autobuild should use the phenix.refine map in rebuilding.  Then you
can tell phenix refine how to make a map (or how to do anything else you
want to specify) with a standard phenix.refine parameters file
"refine.eff" by saying:


Note that a few parameters in phenix.refine are specified directly by
phenix.autobuild (they are listed in the autobuild manual) but by far most
can be set with a refine.eff file.

Let me know if that doesn't do it!
All the best,
Tom T

>> Hi,
>> can autobuild be setup to use kicked maps when starting from a
>> molecular replacement model?
>> Thanks
>> Colin
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://www.phenix-online.org/mailman/listinfo/phenixbb

More information about the phenixbb mailing list