[phenixbb] difference map peaks

Pavel Afonine PAfonine at lbl.gov
Tue Oct 6 17:30:12 PDT 2009

> I suspect that negative peaks are from the bulk-solvent mask, as you 
> suspected. 

The bulk solvent is flat... at least phenix.refine uses Flat Bulk 
solvent model (mask based). If bulk solvent is guilty for this, why 
would you observe peaks ?

I repeat once again: looking at Average Kick map may resolve this puzzle.


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