[phenixbb] PHENIX 1.5 and exploding residues - Problem solved

Antony Oliver antony.oliver at icr.ac.uk
Tue Oct 6 06:09:31 PDT 2009

Dear all,

Making sure that the individual sites refinement was switched on (i.e.  
the tick box checked in the Refinement settings window) solved the  
A slightly embarrassing error on my part I am afraid.

The new GUI is taking a little while to get used to - but I am really  
appreciating the many new features!

With regards,


On 6 Oct 2009, at 12:50, Schubert, Carsten [PRDUS] wrote:

> Tony,
> are things exploding right out of phenix when viewed in another  
> program
> or when you do a real-space refinement in let's say coot? A likely
> culprit is probably a  mismatch between the monomer definitions and  
> your
> atom names. Try to narrow it down to the residues/ligands which are
> exploding, some of them looked OK in your picture, may be you have a
> non-standard aminoacid present? Then check the atom names and residue
> names against the monomer definitions. The monomer file location can  
> be
> queried with phenix.where_mon_lib_list_cif.
> Cheers,
> 	Carsten

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