[phenixbb] Request: read definitions from stdin

Donnie Berkholz dberkholz at gentoo.org
Sun Nov 15 20:27:27 PST 2009

On 09:12 Fri 13 Nov     , Ralf W. Grosse-Kunstleve wrote:
> The --quiet option exists (phenix.refine --help). Reading from
> stdin is too tricky as a general feature ("my job hangs") and since
> phenix.refine cannot work without reading from files (pdb, mtz) and
> writes many files already, that one extra file doesn't really make
> a difference.

Don't let that stop you from scripting, though. I often create a file 
within a shell script for passing into a program, then just clean up 
afterwards. Same effect.


Donald S. Berkholz, Postdoctoral research fellow
James R. Thompson lab, Physiology & Biomedical Engineering
Grazia Isaya lab, Pediatric & Adolescent Medicine
Mayo Clinic College of Medicine
200 First Street SW
Rochester, MN 55905

More information about the phenixbb mailing list