[phenixbb] Running Phenix 1.5.2 with Martin Horvath

Nathaniel Echols NEchols at lbl.gov
Wed Nov 4 15:33:17 PST 2009

On Nov 4, 2009, at 3:25 PM, Raghav Kalia wrote:
> I recently downloaded and installed phenix 1.5-2. I can launch the  
> GUI by double clicking on the phenix icon. However, I cannot get to  
> run phenix.refine on the command line. How does one set paths so  
> that phenix.refine will be recognized in a terminal window?

If using csh:

source /usr/local/phenix-1.5-2/phenix_env

or if using Bash (the default on Mac OS for some time):

source /usr/local/phenix-1.5-2/phenix_env.sh

(If you specified an installation directory, substitute that for /usr/ 

Nathaniel Echols
Lawrence Berkeley Lab
NEchols at lbl.gov

More information about the phenixbb mailing list