[phenixbb] Autobuild error (ligands)

Katya Heldwein Katya.Heldwein at tufts.edu
Thu May 21 05:01:49 PDT 2009


I'm using autobuild in phenix-1.4-59 to rebuild the structure. 
Autobuild throws the error:

AutoBuild Input failed
Sorry, the generation of cif files from 
AutoBuild_run_2_/TEMP0/LIGANDS.pdb did not work. Error message was:
'NoneType' object has no attribute 'id'

I think this may have to do with carbohydrates that I have in the 
structure. I provided the .eff and the .cif files for the carbohydrates 
but something must be going wrong. Could you, please, let me know how 
to troubleshoot this error?


Ekaterina Heldwein, Ph.D.
Assistant Professor
Department of Molecular Biology and Microbiology
Tufts University 136 Harrison Ave
Boston, MA 02111

phone: 617-636-0858
fax: 617-636-0337
e-mail: katya.heldwein at tufts.edu

More information about the phenixbb mailing list