[phenixbb] Autobuild error

Tom Terwilliger terwilliger at lanl.gov
Wed May 20 10:57:56 PDT 2009

Hi Katya,
I'm sorry for the trouble!  Can you first check to make sure you have  
a recent version of phenix (i.e., in the last few months). There was  
an earlier version that sometimes had this problem but I think that it  
should not be happening now.  If not, can you download a current  
nightly build (take one from a few days ago to be safe) and try again?
If that does not do it, then if you could email me a listing of the  
autoBuild directories with "ls -lR" and send me the AutoBuild_run_1_/ 
AutoBuild_run_1_1.log file that would be most helpful.
All the best,
Tom T

Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss

On May 20, 2009, at 11:51 AM, Katya Heldwein wrote:

> Hi, I am trying to run Autobuild to generate a very good rebuilt  
> model using
> phenix.autobuild data=data.mtz model=coords.pdb multiple_models=True \
>  include_input_model=True  \
>  multiple_models_number=1 n_cycle_rebuild_max=5
> with some modifications.
> When I run it, I get the following error:
> ********************************************************************************
> Failed to carry out AutoBuild_multiple_models:
> [Errno 2] No such file or directory: 'AutoBuild_run_1_/TEMP0/ 
> temporary.com'
> ********************************************************************************
> How can I troubleshoot this problem?
> Katya
> -- 
> Ekaterina Heldwein, Ph.D.
> Assistant Professor
> Department of Molecular Biology and Microbiology
> Tufts University 136 Harrison Ave
> Boston, MA 02111
> phone: 617-636-0858
> fax: 617-636-0337
> e-mail: katya.heldwein at tufts.edu
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20090520/f45f995b/attachment-0003.htm>

More information about the phenixbb mailing list