[phenixbb] autosol error 1.4-3 when trying to specify deriv.inano=noinano

Tom Terwilliger terwilliger at lanl.gov
Fri Jun 5 11:24:34 PDT 2009

Hi Francis,

That is a message that is meant for me when I am changing the autosol  
inputs...you certainly shouldn't be getting it if everything were  
working correctly.

I am guessing that you don't have a current PHENIX installation, as  
you mention version 1.4-3. I think the best solution is to download  
the latest "nightly build" of phenix from the website; this will fix  
many things and at least let us be on the same page with this error. I  
am expecting it will go away with this version, but if not please let  
me know!

With the current version I can say:

phenix.autosol native.data=native.sca deriv.data=peak.sca  
deriv.inano=inano 2 pt

and it runs fine.

(I can also say that with version 1.4-3 however so that doesn't prove  

All the best,
Tom T

On Jun 5, 2009, at 11:56 AM, Francis E Reyes wrote:

> ------------------------------------------------------------
> Starting AutoSol with the command:
> phenix.autosol
> Reading effective parameters from autosol.eff
> The key inano is not in var_type_dict...this means the command-line
> Wizard needs a conversion in the autosol.py script
>  under 'Translating inputs' or else in
> excluded_inputs(['write_run_directory_to_file', 'carry_on', 'run',
> 'copy_run', 'delete_runs', 'display_runs', 'display_facts',
> 'display_summary', 'display_labels', 'coot', 'dry_run', 'stop',
> 'params_only', 'sites', 'atom_type', 'sites_file', 'seq_file',
> 'quick', 'data', 'f_prime', 'f_double_prime', 'labels', 'sites',
> 'atom_type', 'peak', 'infl', 'high', 'low', 'remote', 'native',
> 'deriv'])
> Any ideas?
> Thanks
> FR
> ---------------------------------------------
> Francis Reyes M.Sc.
> 215 UCB
> University of Colorado at Boulder
> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
> 8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D
> _______________________________________________
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss

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