[phenixbb] Integrating Phenix with Torque

Jeremy Mann jeremy at biochem.uthscsa.edu
Wed Jul 29 07:08:07 PDT 2009

A new user of mine wants to run Phenix on two of our clusters. We use
Torque/Maui as our batch scheduler and would like to integrated their
usage of Phenix.

They want to run something like:

phenix.autobuild  data=data.hkl seq_file=seq.dat model=model.pdb
multiple_models=True multiple_models_number=20 n_cycle_rebuild_max=5
nbatch=20 nproc=20

The documentation mentions briefly the ability to use batch schedulers but
doesn't give examples of submission scripts.

Jeremy Mann
jeremy at biochem.uthscsa.edu

University of Texas Health Science Center
Bioinformatics Core Facility
Phone: (210) 567-2672

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