[phenixbb] ENSEmble parameters when the model is an EM map

Peter Grey petgxray at gmail.com
Thu Jul 23 08:08:50 PDT 2009

Dear benevolent experts,

I am trying to use Phaser for molecular replacement with EM-map as a model.
The EM map, originally in a small P1 cell, was put in large P1 using CCP4's
MAPROT and a mask that was defined by a certain cut-off level.
Could you please advise me how to derive the EXTEnt and CENTre parameters
needed for ENSEmble building ?
Does the simple way of giving the size of the original P1 as the EXTEnt and
its centre as CENTre sound reasonable ?

I would be grateful for any advice and comments,

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