[phenixbb] Site-wide defaults for phenix.refine parameters

Nathaniel Echols NEchols at lbl.gov
Thu Jan 29 10:01:53 PST 2009

On Jan 29, 2009, at 9:49 AM, Stephen Graham wrote:
>> For the command-line version, couldn't you just alias phenix.refine  
>> to
>> "phenix.refine ~/.phenix/refine_defaults.def"?
> Yes, that would probably be more or less perfect (I assume that, if
> something is defined separately in two .def files, the one which
> appears last on the command line would take precedence?)

I think so.  I'm not sure what the interaction between parameters  
specified manually on the command-line and parameters extracted from  
files is, however.

Nathaniel Echols
Lawrence Berkeley Lab
NEchols at lbl.gov

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