[phenixbb] TLS in phenix.refine_gui

Pavel Afonine pafonine at lbl.gov
Sat Jan 10 22:18:42 PST 2009

Hi Miles,

I'm not sure if it's available in the current version you use (I'm not 
exercising GUI regularly), but what I was suggesting several times is to 
have an option in phenix.refine GUI for loading in a user's parameters 
file. Such parameters file may contain various selections (such as TLS, 
rigid body, NCS, custom bonds and so on), or just a set of some other 
parameters (for example, when I do high resolution refinement I have my 
parameters file where I adjust ~10-15 values).
If it's not available right now I hope Nat will add it in some 
foreseeable future. I agree it's very important and convenient to have.

I'm using this occasion once again to thank Ethan Merritt for adjusting 
his TLSMD server so it now provides phenix.refine friendly TLS selections.


On 1/10/2009 9:29 PM, Miles Pufall wrote:
> Hi Guys - 
> Is there a way to load the TLS groups, generated so kindly by TLSMD in 
> old phenix format, into the new gui?  It would save a lot of typing.
> Thanks!
> Miles
> Miles Pufall
> Postdoctoral Scholar
> Yamamoto Lab
> UC San Francisco
> Cellular and Molecular Pharmacology
> Mail Stop 2280
> 600 16th Street, Genentech Hall S-574
> San Francisco, California 94158-2517
> (415)476-4480
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