[phenixbb] Running Autobuild after Autosol
Thomas C. Terwilliger
terwilliger at lanl.gov
Fri Aug 14 06:46:27 PDT 2009
AutoBuild will look through all the autosol runs and choose the solution
with the highest final score, and use that one. You can see this near the
beginning of the AutoBuild run:
Appending solution 4060.75360229 1 75.3602294036
Appending solution 59.3469818876 2 59.3469818876 None solve_2.mtz
Best solution 4060.75360229 1 75.3602294036
exptl_fobs_phases_freeR_flags_1.mtz solve_1.mtz AutoSol_run_2_
In this case it took run 2 with the solution solve_1.mtz with score of
4060.7 over the solution solve_2.mtz with score of 59.
If you want to choose a different AutoSol solution, then you will need to
explicitly tell AutoBuild all the files that you want to use.
All the best,
>> how do I specify running Autobuild after Autosol, in the command line
>> mode? I see the "phenix.autobuild after_autosol" option in the manual,
>> but how will Autobuild know which Autosol run to use?
>> Ekaterina Heldwein, Ph.D.
>> Assistant Professor
>> Department of Molecular Biology and Microbiology
>> Tufts University 136 Harrison Ave
>> Boston, MA 02111
>> phone: 617-636-0858
>> fax: 617-636-0337
>> e-mail: katya.heldwein at tufts.edu
>> phenixbb mailing list
>> phenixbb at phenix-online.org
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