[phenixbb] "phenix.fobs_minus_fobs_map" new tool in PHENIX

Tom Terwilliger terwilliger at lanl.gov
Thu Apr 30 13:01:36 PDT 2009

Hi Pavel,
I'm having trouble using your tool...Can you unpack


and try:

coords.pdb	native.mtz	native.sca	peak.mtz	peak.sca
[ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map  
peak.mtz native.mtz phase_source=coords.pdb

========================== phenix.fobs_minus_fobs_map  

Command line arguments:
['peak.mtz', 'native.mtz', 'phase_source=coords.pdb']

Sorry: No PDB file found.


  phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb

========================== phenix.fobs_minus_fobs_map  

Command line arguments:
['peak.sca', 'native.sca', 'coords.pdb']

*** Parameters:
f_obs_1_file_name = None
f_obs_1_label = None
f_obs_2_file_name = None
f_obs_2_label = None
high_resolution = None
low_resolution = None
sigma_cutoff = None
phase_source = None
scattering_table = *xray neutron

Sorry: No reflection data file found.

-Tom T

Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss

On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:

> fobs_minus_fobs_map

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